Hal: an Automated Pipeline for Phylogenetic Analyses of Genomic Data
نویسندگان
چکیده
منابع مشابه
Hal: an Automated Pipeline for Phylogenetic Analyses of Genomic Data
The rapid increase in genomic and genome-scale data is resulting in unprecedented levels of discrete sequence data available for phylogenetic analyses. Major analytical impasses exist, however, prior to analyzing these data with existing phylogenetic software. Obstacles include the management of large data sets without standardized naming conventions, identification and filtering of orthologous...
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REFGEN and TREENAMER: Automated Sequence Data Handling for Phylogenetic Analysis in the Genomic Era
The phylogenetic analysis of nucleotide sequences and increasingly that of amino acid sequences is used to address a number of biological questions. Access to extensive datasets, including numerous genome projects, means that standard phylogenetic analyses can include many hundreds of sequences. Unfortunately, most phylogenetic analysis programs do not tolerate the sequence naming conventions o...
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ژورنال
عنوان ژورنال: PLoS Currents
سال: 2011
ISSN: 2157-3999
DOI: 10.1371/currents.rrn1213